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Posted Fri, 11/26/2010 - 13:23

Moodle Analytics Tool v0.7

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Installing Gblocks on Linux

Posted Sun, 11/14/2010 - 23:03

Gblocks is an alignment curation tool which eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences.

Installation

WEGO

Posted Tue, 01/05/2010 - 19:13
URL: 

http://wego.genomics.org.cn/cgi-bin/wego/index.pl

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Publications: 

PMID: 16845012

Contributed by: 

m.jan

WebGestalt

Posted Tue, 01/05/2010 - 19:12
URL: 

http://genereg.ornl.gov/webgestalt/

WebGestalt

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Publications: 

PMID: 15980575

Contributed by: 

m.jan

VIRGO

Posted Tue, 01/05/2010 - 19:11
URL: 

http://whipple.cs.vt.edu:8080/virgo

VIRGO

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Publications: 

PMID: 14981259 PMID: 16845022

Contributed by: 

m.jan

Ulysses

Posted Tue, 01/05/2010 - 19:10
URL: 

http://www.cisreg.ca:8080/ulysses/

Ulysses

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Publications: 

PMID: 16356269

Contributed by: 

m.jan

UCSC Human Genome Browser Gateway

Posted Tue, 01/05/2010 - 19:09
URL: 

http://genome.ucsc.edu/cgi-bin/hgGateway?org=Human&db=0&hgsid=27735471

Provides a rapid and reliable display of any requested portion of the human genome at any scale, together with dozens of aligned annotation tracks.

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Publications: 

PMID: 12519945

Contributed by: 

m.jan

TIGR Software Tools

Posted Tue, 01/05/2010 - 19:07
URL: 

http://www.tigr.org/software/

A list of open-source software packages available for free from The Institute for Genomic Research (TIGR).

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Publications: 

PMID: 12824375

Contributed by: 

m.jan

The Chromosome 7 Annotation Project

Posted Tue, 01/05/2010 - 19:06
URL: 

http://www.chr7.org/

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Publications: 

no PMID

Contributed by: 

m.jan

Taverna

Posted Tue, 01/05/2010 - 19:05
URL: 

http://taverna.sourceforge.net/

Taverna
Taverna is a tool for creating and running bioinformatics workflows.

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Publications: 

PMID: 15201187 PMID: 16845108

Contributed by: 

m.jan

TargetIdentifier

Posted Tue, 01/05/2010 - 19:04
URL: 

http://proteomics.ysu.edu/tools/TargetIdentifier.html

TargetIdentifier is designed for identifying full-length EST cDNAs and functionally annotating EST cDNAs.

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Publications: 

PMID: 15980559

Contributed by: 

m.jan

TACT

Posted Tue, 01/05/2010 - 19:03
URL: 

http://jbirc.jbic.or.jp/tact/

TACT

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Publications: 

PMID: 15103394 PMID: 16185827 PMID: 16845023

Contributed by: 

m.jan

SVC

Posted Tue, 01/05/2010 - 19:01
URL: 

http://svc.molgen.mpg.de/

SVC (Structured Visualization of Evolutionary Conserved Sequences) is a tool that can search for pairs of orthologous genes, align the protein coding sequences, and visualize the evolutionary sequence

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Publications: 

PMID: 15991338

Contributed by: 

m.jan

Sockeye

Posted Tue, 01/05/2010 - 19:00
URL: 

http://www.bcgsc.ca/gc/bomge/sockeye/

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Publications: 

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Contributed by: 

m.jan

Sequin

Posted Tue, 01/05/2010 - 18:59
URL: 

http://www.ncbi.nlm.nih.gov/Sequin/index.html

Desktop tool developed by the NCBI for editing, annotating and submitting DNA sequences to any of the three DNA sequence submission sites (DDBJ, EMBL or GenBank).

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Contributed by: 

m.jan

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