Strategy: Finding solved 3D structures of all proteins implicated in diabetes
Suppose I am working on diabetes and I would like to find all the solved protein structures which have been implicated in diabetes. I could find this information using UniProt in just a few steps. Following is how:
- Go to http://www.uniprot.org
- Choose UniProt Knowledgebase (UniProtKB) in the search field
- Type "diabetes" in the Query field
- UniProt returned around 700 entries
- My first entry is Q14654. Click on this entry
- Scroll down to read the annotation section
- Involvement in disease is a particularly interesting section
- Scroll down to the keywords in the Ontology section
- Here I find out that this protein is involved in Diabetes Mellitus
- Since this is keyword, I can use it to filter my results
- Click on the back button of your browser
- Click on the "keyword" link
- Now click on the "Keywords" link. This would add keywords column to your search results
- Click on the "Customize display" link
- Add the 3D link and then click on Save
- Click on the "Show only entries with structural information" link
- Now I see that proteins whose structure is solved using x-ray crystallography, NMR, or by modeling
- I could scroll down and study the folds and search for other proteins containing similar folds. I could use cross-references to view the structure in PDB or MDB. It would soon become apparent that many proteins but only a few folds are involved in the diabetes.